Package: coarseDataTools 0.7.1
coarseDataTools: Analysis of Coarsely Observed Data
Functions to analyze coarse data. Specifically, it contains functions to (1) fit parametric accelerated failure time models to interval-censored survival time data, and (2) estimate the case-fatality ratio in scenarios with under-reporting. This package's development was motivated by applications to infectious disease: in particular, problems with estimating the incubation period and the case fatality ratio of a given disease. Sample data files are included in the package. See Reich et al. (2009) <doi:10.1002/sim.3659>, Reich et al. (2012) <doi:10.1111/j.1541-0420.2011.01709.x>, and Lessler et al. (2009) <doi:10.1016/S1473-3099(09)70069-6>.
Authors:
coarseDataTools_0.7.1.tar.gz
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coarseDataTools_0.7.1.tgz(r-4.4-any)coarseDataTools_0.7.1.tgz(r-4.3-any)
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coarseDataTools.pdf |coarseDataTools.html✨
coarseDataTools/json (API)
NEWS
# Install 'coarseDataTools' in R: |
install.packages('coarseDataTools', repos = c('https://nickreich.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/nickreich/coarsedatatools/issues
- exp.win.lengths - Exposure window lengths from an influenza outbreak at a NYC school
- fluA.inc.per - Coarse incubation period data for influenza A
- nycH1N1 - Incubation period data from New York City Public Schools, 2009 H1N1 influenza outbreak
- simulated.outbreak.deaths - Simulated case and death reports from a fictional outbreak
Last updated 1 years agofrom:fe784b1241. Checks:OK: 5 NOTE: 2. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 20 2024 |
R-4.5-win | NOTE | Nov 20 2024 |
R-4.5-linux | NOTE | Nov 20 2024 |
R-4.4-win | OK | Nov 20 2024 |
R-4.4-mac | OK | Nov 20 2024 |
R-4.3-win | OK | Nov 20 2024 |
R-4.3-mac | OK | Nov 20 2024 |
Exports:dic.fitdic.fit.mcmcEMforCFRgenerate.coarse.dataget.obs.typelogLikloglikhdprecision.simulationprecision.simulation.coarseprecision.simulation.exact
Dependencies:codalatticeMASSMatrixMatrixModelsmcmcMCMCpackquantregSparseMsurvival